import random
from bisect import bisect_left
from distutils.version import LooseVersion
from itertools import cycle
from operator import itemgetter, add
from ..utils import funcname, import_required, apply
from ..core import istask
_BOKEH_MISSING_MSG = "Diagnostics plots require `bokeh` to be installed"
_TOOLZ_MISSING_MSG = "Diagnostics plots require `toolz` to be installed"
def unquote(expr):
if istask(expr):
if expr[0] in (tuple, list, set):
return expr[0](map(unquote, expr[1]))
elif (
expr[0] == dict
and isinstance(expr[1], list)
and isinstance(expr[1][0], list)
):
return dict(map(unquote, expr[1]))
return expr
def pprint_task(task, keys, label_size=60):
"""Return a nicely formatted string for a task.
Parameters
----------
task:
Value within dask graph to render as text
keys: iterable
List of keys within dask graph
label_size: int (optional)
Maximum size of output label, defaults to 60
Examples
--------
>>> from operator import add, mul
>>> dsk = {'a': 1,
... 'b': 2,
... 'c': (add, 'a', 'b'),
... 'd': (add, (mul, 'a', 'b'), 'c'),
... 'e': (sum, ['a', 'b', 5]),
... 'f': (add,),
... 'g': []}
>>> pprint_task(dsk['c'], dsk)
'add(_, _)'
>>> pprint_task(dsk['d'], dsk)
'add(mul(_, _), _)'
>>> pprint_task(dsk['e'], dsk)
'sum([_, _, *])'
>>> pprint_task(dsk['f'], dsk)
'add()'
>>> pprint_task(dsk['g'], dsk)
'[]'
"""
if istask(task):
func = task[0]
if func is apply:
head = funcname(task[1])
tail = ")"
args = unquote(task[2]) if len(task) > 2 else ()
kwargs = unquote(task[3]) if len(task) > 3 else {}
else:
if hasattr(func, "funcs"):
head = "(".join(funcname(f) for f in func.funcs)
tail = ")" * len(func.funcs)
else:
head = funcname(task[0])
tail = ")"
args = task[1:]
kwargs = {}
if args or kwargs:
label_size2 = int(
(label_size - len(head) - len(tail)) // (len(args) + len(kwargs))
)
pprint = lambda t: pprint_task(t, keys, label_size2)
if args:
if label_size2 > 5:
args = ", ".join(pprint(t) for t in args)
else:
args = "..."
else:
args = ""
if kwargs:
if label_size2 > 5:
kwargs = ", " + ", ".join(
"{0}={1}".format(k, pprint(v)) for k, v in sorted(kwargs.items())
)
else:
kwargs = ", ..."
else:
kwargs = ""
return "{0}({1}{2}{3}".format(head, args, kwargs, tail)
elif isinstance(task, list):
if not task:
return "[]"
elif len(task) > 3:
result = pprint_task(task[:3], keys, label_size)
return result[:-1] + ", ...]"
else:
label_size2 = int((label_size - 2 - 2 * len(task)) // len(task))
args = ", ".join(pprint_task(t, keys, label_size2) for t in task)
return "[{0}]".format(args)
else:
try:
if task in keys:
return "_"
else:
return "*"
except TypeError:
return "*"
def get_colors(palette, funcs):
"""Get a dict mapping funcs to colors from palette.
Parameters
----------
palette : string
Name of the bokeh palette to use, must be a member of
bokeh.palettes.all_palettes.
funcs : iterable
Iterable of function names
"""
palettes = import_required("bokeh.palettes", _BOKEH_MISSING_MSG)
tz = import_required("tlz", _TOOLZ_MISSING_MSG)
unique_funcs = list(sorted(tz.unique(funcs)))
n_funcs = len(unique_funcs)
palette_lookup = palettes.all_palettes[palette]
keys = list(sorted(palette_lookup.keys()))
index = keys[min(bisect_left(keys, n_funcs), len(keys) - 1)]
palette = palette_lookup[index]
# Some bokeh palettes repeat colors, we want just the unique set
palette = list(tz.unique(palette))
if len(palette) > n_funcs:
# Consistently shuffle palette - prevents just using low-range
random.Random(42).shuffle(palette)
color_lookup = dict(zip(unique_funcs, cycle(palette)))
return [color_lookup[n] for n in funcs]
[docs]def visualize(profilers, file_path=None, show=True, save=True, **kwargs):
"""Visualize the results of profiling in a bokeh plot.
If multiple profilers are passed in, the plots are stacked vertically.
Parameters
----------
profilers : profiler or list
Profiler or list of profilers.
file_path : string, optional
Name of the plot output file.
show : boolean, optional
If True (default), the plot is opened in a browser.
save : boolean, optional
If True (default), the plot is saved to disk.
**kwargs
Other keyword arguments, passed to bokeh.figure. These will override
all defaults set by visualize.
Returns
-------
The completed bokeh plot object.
"""
bp = import_required("bokeh.plotting", _BOKEH_MISSING_MSG)
import bokeh
if LooseVersion(bokeh.__version__) >= "0.12.10":
from bokeh.io import state
in_notebook = state.curstate().notebook
else:
from bokeh.io import _state
in_notebook = _state._notebook
if not in_notebook:
file_path = file_path or "profile.html"
bp.output_file(file_path)
if not isinstance(profilers, list):
profilers = [profilers]
figs = [prof._plot(**kwargs) for prof in profilers]
# Stack the plots
if len(figs) == 1:
p = figs[0]
else:
top = figs[0]
for f in figs[1:]:
f.x_range = top.x_range
f.title = None
f.min_border_top = 20
f.plot_height -= 30
for f in figs[:-1]:
f.xaxis.axis_label = None
f.min_border_bottom = 20
f.plot_height -= 30
for f in figs:
f.min_border_left = 75
f.min_border_right = 75
p = bp.gridplot([[f] for f in figs])
if show:
bp.show(p)
if file_path and save:
bp.save(p)
return p
def _get_figure_keywords():
bp = import_required("bokeh.plotting", _BOKEH_MISSING_MSG)
o = bp.Figure.properties()
o.add("tools")
return o
def plot_tasks(results, dsk, palette="Viridis", label_size=60, **kwargs):
"""Visualize the results of profiling in a bokeh plot.
Parameters
----------
results : sequence
Output of Profiler.results
dsk : dict
The dask graph being profiled.
palette : string, optional
Name of the bokeh palette to use, must be a member of
bokeh.palettes.all_palettes.
label_size: int (optional)
Maximum size of output labels in plot, defaults to 60
**kwargs
Other keyword arguments, passed to bokeh.figure. These will override
all defaults set by visualize.
Returns
-------
The completed bokeh plot object.
"""
bp = import_required("bokeh.plotting", _BOKEH_MISSING_MSG)
from bokeh.models import HoverTool
tz = import_required("tlz", _TOOLZ_MISSING_MSG)
defaults = dict(
title="Profile Results",
tools="hover,save,reset,xwheel_zoom,xpan",
toolbar_location="above",
plot_width=800,
plot_height=300,
)
defaults.update((k, v) for (k, v) in kwargs.items() if k in _get_figure_keywords())
if results:
keys, tasks, starts, ends, ids = zip(*results)
id_group = tz.groupby(itemgetter(4), results)
timings = dict(
(k, [i.end_time - i.start_time for i in v]) for (k, v) in id_group.items()
)
id_lk = dict(
(t[0], n)
for (n, t) in enumerate(
sorted(timings.items(), key=itemgetter(1), reverse=True)
)
)
left = min(starts)
right = max(ends)
p = bp.figure(
y_range=[str(i) for i in range(len(id_lk))],
x_range=[0, right - left],
**defaults
)
data = {}
data["width"] = width = [e - s for (s, e) in zip(starts, ends)]
data["x"] = [w / 2 + s - left for (w, s) in zip(width, starts)]
data["y"] = [id_lk[i] + 1 for i in ids]
data["function"] = funcs = [pprint_task(i, dsk, label_size) for i in tasks]
data["color"] = get_colors(palette, funcs)
data["key"] = [str(i) for i in keys]
source = bp.ColumnDataSource(data=data)
p.rect(
source=source,
x="x",
y="y",
height=1,
width="width",
color="color",
line_color="gray",
)
else:
p = bp.figure(y_range=[str(i) for i in range(8)], x_range=[0, 10], **defaults)
p.grid.grid_line_color = None
p.axis.axis_line_color = None
p.axis.major_tick_line_color = None
p.yaxis.axis_label = "Worker ID"
p.xaxis.axis_label = "Time (s)"
hover = p.select(HoverTool)
hover.tooltips = """
<div>
<span style="font-size: 14px; font-weight: bold;">Key:</span>
<span style="font-size: 10px; font-family: Monaco, monospace;">@key</span>
</div>
<div>
<span style="font-size: 14px; font-weight: bold;">Task:</span>
<span style="font-size: 10px; font-family: Monaco, monospace;">@function</span>
</div>
"""
hover.point_policy = "follow_mouse"
return p
def plot_resources(results, palette="Viridis", **kwargs):
"""Plot resource usage in a bokeh plot.
Parameters
----------
results : sequence
Output of ResourceProfiler.results
palette : string, optional
Name of the bokeh palette to use, must be a member of
bokeh.palettes.all_palettes.
**kwargs
Other keyword arguments, passed to bokeh.figure. These will override
all defaults set by plot_resources.
Returns
-------
The completed bokeh plot object.
"""
bp = import_required("bokeh.plotting", _BOKEH_MISSING_MSG)
import bokeh
from bokeh import palettes
from bokeh.models import LinearAxis, Range1d
defaults = dict(
title="Profile Results",
tools="save,reset,xwheel_zoom,xpan",
toolbar_location="above",
plot_width=800,
plot_height=300,
)
defaults.update((k, v) for (k, v) in kwargs.items() if k in _get_figure_keywords())
if results:
t, mem, cpu = zip(*results)
left, right = min(t), max(t)
t = [i - left for i in t]
p = bp.figure(
y_range=fix_bounds(0, max(cpu), 100),
x_range=fix_bounds(0, right - left, 1),
**defaults
)
else:
t = mem = cpu = []
p = bp.figure(y_range=(0, 100), x_range=(0, 1), **defaults)
colors = palettes.all_palettes[palette][6]
p.line(
t,
cpu,
color=colors[0],
line_width=4,
**{
"legend_label"
if LooseVersion(bokeh.__version__) >= "1.4"
else "legend": "% CPU"
}
)
p.yaxis.axis_label = "% CPU"
p.extra_y_ranges = {
"memory": Range1d(
*fix_bounds(min(mem) if mem else 0, max(mem) if mem else 100, 100)
)
}
p.line(
t,
mem,
color=colors[2],
y_range_name="memory",
line_width=4,
**{
"legend_label"
if LooseVersion(bokeh.__version__) >= "1.4"
else "legend": "Memory"
}
)
p.add_layout(LinearAxis(y_range_name="memory", axis_label="Memory (MB)"), "right")
p.xaxis.axis_label = "Time (s)"
return p
def fix_bounds(start, end, min_span):
"""Adjust end point to ensure span of at least `min_span`"""
return start, max(end, start + min_span)
def plot_cache(
results, dsk, start_time, metric_name, palette="Viridis", label_size=60, **kwargs
):
"""Visualize the results of profiling in a bokeh plot.
Parameters
----------
results : sequence
Output of CacheProfiler.results
dsk : dict
The dask graph being profiled.
start_time : float
Start time of the profile.
metric_name : string
Metric used to measure cache size
palette : string, optional
Name of the bokeh palette to use, must be a member of
bokeh.palettes.all_palettes.
label_size: int (optional)
Maximum size of output labels in plot, defaults to 60
**kwargs
Other keyword arguments, passed to bokeh.figure. These will override
all defaults set by visualize.
Returns
-------
The completed bokeh plot object.
"""
bp = import_required("bokeh.plotting", _BOKEH_MISSING_MSG)
from bokeh.models import HoverTool
tz = import_required("tlz", _TOOLZ_MISSING_MSG)
defaults = dict(
title="Profile Results",
tools="hover,save,reset,wheel_zoom,xpan",
toolbar_location="above",
plot_width=800,
plot_height=300,
)
defaults.update((k, v) for (k, v) in kwargs.items() if k in _get_figure_keywords())
if results:
starts, ends = list(zip(*results))[3:]
tics = list(sorted(tz.unique(starts + ends)))
groups = tz.groupby(lambda d: pprint_task(d[1], dsk, label_size), results)
data = {}
for k, vals in groups.items():
cnts = dict.fromkeys(tics, 0)
for v in vals:
cnts[v.cache_time] += v.metric
cnts[v.free_time] -= v.metric
data[k] = [0] + list(tz.accumulate(add, tz.pluck(1, sorted(cnts.items()))))
tics = [0] + [i - start_time for i in tics]
p = bp.figure(x_range=[0, max(tics)], **defaults)
for (key, val), color in zip(data.items(), get_colors(palette, data.keys())):
p.line(
"x",
"y",
line_color=color,
line_width=3,
source=bp.ColumnDataSource(
{"x": tics, "y": val, "label": [key for i in val]}
),
)
else:
p = bp.figure(y_range=[0, 10], x_range=[0, 10], **defaults)
p.yaxis.axis_label = "Cache Size ({0})".format(metric_name)
p.xaxis.axis_label = "Time (s)"
hover = p.select(HoverTool)
hover.tooltips = """
<div>
<span style="font-size: 14px; font-weight: bold;">Task:</span>
<span style="font-size: 10px; font-family: Monaco, monospace;">@label</span>
</div>
"""
return p